If you’re looking for a delicious, protein-packed breakfast that you can prepare ahead of time and enjoy all week long, this Pizza Egg Muffins Recipe will totally become your new favorite. Bursting with fresh veggies, melty mozzarella, and pepperoni bits, these mini muffins capture all the tasty fun of pizza in a perfectly portable, egg-based form. Whether you’re rushing out the door or craving a cozy weekend brunch, these muffins make mornings effortless and exciting.

Ingredients You’ll Need
The magic of this Pizza Egg Muffins Recipe is in the simplicity and freshness of the ingredients. Each element adds flavor, texture, and color, making every bite vibrant and satisfying without any fuss.
- 12 eggs: The protein-packed base that brings everything together with a fluffy texture.
- 1 teaspoon salt: Enhances all the flavors to perfection.
- 1/2 teaspoon pepper: Adds a mild kick and warmth.
- 2 dashes crushed red pepper: For a subtle spicy undertone, customizable to taste.
- 1/2 teaspoon garlic powder: Infuses savory depth with minimal effort.
- 1/2 cup shredded mozzarella cheese: Gives melty, stretchy cheese goodness right in the batter.
- 1 green onion (cut into 3-inch segments): Adds a sharp, fresh bite and beautiful green color.
- 1 green bell pepper (chopped into 2-inch segments): Brings sweetness and crunch.
- 2 smallish tomatoes (roughly chopped): Juicy bursts of acidity that brighten every mouthful.
- 3 handfuls spinach (about 2 cups): Loads the muffins with nutritious greens without overpowering the pizza flavors.
- 5 ounces pepperoni (save a 1-inch stack to top muffins with): Classic pizza’s smoky, savory star ingredient.
- 1/2-1 cup mozzarella cheese (to top muffins): For that irresistible golden, bubbly topping.
How to Make Pizza Egg Muffins Recipe
Step 1: Prep Your Oven and Muffin Tins
Preheat your oven to 350 degrees F and generously grease two muffin tins with butter, oil, or nonstick spray. Don’t be shy here – a good coating will make those muffins pop out easily and crisp up the edges just right.
Step 2: Whisk Up Your Egg Mixture
Crack all 12 eggs into a large bowl, or better yet, your stand mixer bowl. Add salt, pepper, crushed red pepper, and garlic powder. Pour in 1/2 cup of shredded mozzarella and then whisk everything together until fully combined and smooth. This mixture is your flavorful canvas.
Step 3: Chop the Veggies and Pepperoni
Use a food processor to chop the green onion and green bell pepper with quick 1-second pulses until finely chopped but still slightly chunky. Add these to the egg mixture. Then, similarly chop the tomatoes and spinach and mix them in gently. Finally, pulse the pepperoni just enough to break it down into small bits and stir it into the bowl, saving some slices for topping.
Step 4: Portion and Top the Muffins
Use a measuring cup to evenly fill each muffin cup about two-thirds full with your egg and vegetable mixture. This helps ensure even cooking and that every muffin has plenty of tasty fillings. Sprinkle a teaspoon or two of mozzarella on top, then add a few pepperoni slices for that classic pizza look and finish.
Step 5: Bake to Perfection
Bake your pizza egg muffins for 22 to 24 minutes until they’re puffed up and a toothpick inserted in the center comes out clean. If you’re baking two pans at once, swap their positions halfway through for even heat distribution. Keep in mind, they’ll puff up beautifully but settle right back down once out of the oven.
Step 6: Cool and Remove
Let the muffins cool in the pan for a few minutes so they set nicely. Then, gently run a knife or spatula around each muffin’s edge and lift them out carefully. These puppies are best enjoyed warm but also hold up great for later!
How to Serve Pizza Egg Muffins Recipe

Garnishes
A sprinkle of fresh chopped basil or a little extra grated Parmesan adds a fresh, bright touch that complements the rich egg and pepperoni flavors beautifully. If you like a bit more heat, a drizzle of your favorite hot sauce amps up the fun.
Side Dishes
Pair these egg muffins with a crisp green salad dressed with lemon vinaigrette or some sliced avocado to boost creaminess. Fresh fruit like juicy berries or orange segments also makes a refreshing, sweet contrast.
Creative Ways to Present
Try stacking two muffins on a toasted English muffin or bagel with a smear of marinara sauce for a portable “pizza” sandwich. Or scatter them on a brunch platter alongside colorful vegetable crudités and dips for a party-ready spread.
Make Ahead and Storage
Storing Leftovers
Cool the muffins completely before wrapping each in plastic wrap. Store in an airtight container in the fridge for up to 4 days, making weekday breakfasts that much easier and tastier.
Freezing
These muffins freeze like a dream! Wrap individually and place them in a freezer-safe ziplock bag. They’ll keep well for at least a month, so you can stock up and have breakfast sorted anytime.
Reheating
Remove the plastic wrap before reheating and place your muffin on a plate lined with a paper towel. Microwave for 1 minute, then check; if needed, add an extra 30 to 60 seconds. Be careful not to overheat or the eggs can get rubbery, and no one wants that.
FAQs
Can I use a different type of cheese?
Absolutely! While mozzarella gives that classic pizza melt, you can experiment with cheddar, gouda, or even a spicy pepper jack to tailor the flavors to your liking.
Is this recipe gluten-free?
Yes! Since there is no flour or bread involved, these pizza egg muffins are naturally gluten-free and perfect for those avoiding gluten.
Can I make these muffins vegetarian?
Definitely. Simply leave out the pepperoni and add extra veggies or a vegetarian sausage for a delicious meat-free version.
How long do these muffins keep in the fridge?
You can store these muffins in the fridge for up to 4 days. Just make sure to keep them well wrapped to maintain freshness.
Can I add other vegetables?
Feel free to customize! Mushrooms, zucchini, or onions would all work wonderfully. Just chop them finely so they cook evenly with the eggs.
Final Thoughts
This Pizza Egg Muffins Recipe is a total game changer for busy mornings or casual brunches where you want all the flavor and none of the hassle. Trust me, once you give these a try, you’ll wonder how you ever managed breakfast without them. Whip up a batch, keep them handy, and enjoy a slice of pizza-inspired joy whenever the craving strikes!
Print
Pizza Egg Muffins Recipe
- Prep Time: 10 minutes
- Cook Time: 25 minutes
- Total Time: 35 minutes
- Yield: 18 servings
- Category: Breakfast
- Method: Baking
- Cuisine: American
- Diet: Low Salt
Description
These Pizza Egg Muffins are a perfect make-ahead weekday breakfast option combining eggs, veggies, pepperoni, and mozzarella cheese for a flavorful, protein-packed start to your day. Baked in muffin tins, they are convenient, portable, and freezer-friendly, ideal for quick mornings.
Ingredients
Egg Mixture
- 12 eggs
- 1 teaspoon salt
- 1/2 teaspoon pepper
- 2 dashes crushed red pepper (or to taste)
- 1/2 teaspoon garlic powder
- 1/2 cup shredded mozzarella cheese
Vegetables
- 1 green onion (cut into 3 inch segments)
- 1 green bell pepper (chopped into 2-inch segments)
- 2 smallish tomatoes (roughly chopped)
- 3 handfuls spinach (about 2 cups)
Meat and Toppings
- 5 ounces pepperoni (save a 1-inch stack to top muffins with)
- 1/2–1 cup mozzarella cheese (to top muffins)
Instructions
- Preheat and Prepare Tins: Preheat oven to 350 degrees F. Grease two muffin tins generously with butter, oil, or nonstick spray to prevent sticking during baking.
- Mix Eggs: Crack 12 eggs into a large mixing bowl and add salt, pepper, crushed red pepper, and garlic powder. Whisk to combine.
- Add Cheese: Add 1/2 cup shredded mozzarella cheese to the eggs and whisk thoroughly.
- Process Green Onion and Bell Pepper: Using a food processor, pulse the green onion and green bell pepper in short 1-second bursts until chopped but not pureed. Add these to the egg mixture.
- Process Tomatoes and Spinach: Pulse the tomatoes and spinach in the food processor in 1-second intervals until chopped but still textured. Add to the egg mixture.
- Chop Pepperoni: Pulse the pepperoni in the food processor until finely chopped. Reserve some for topping. Add the chopped pepperoni to the egg mixture.
- Combine and Distribute Mixture: Give the entire egg mixture a final whisk. Using a measuring cup, fill each muffin tin about two-thirds full, distributing the vegetables and meat evenly.
- Add Toppings: Top each muffin with a spoonful of mozzarella cheese and a few quarters of pepperoni slices saved earlier.
- Bake Muffins: Bake at 350°F for 22–24 minutes until a toothpick inserted in the center comes out clean. If baking both pans simultaneously, rotate them halfway through baking.
- Cool and Remove: Note that the muffins will puff up during baking and collapse upon removal. After cooling for several minutes in the pan, run a knife or spatula around the edges and gently lift each muffin out.
- Store or Serve: Enjoy immediately or let cool completely. Wrap each muffin individually in plastic wrap and store in a freezer-safe ziplock bag. Freeze up to one month.
- Reheat: To reheat, remove plastic wrap and place muffin on a paper towel on a microwave-safe plate. Microwave on high for 1 minute, then check temperature. Heat in additional 30-60 second increments as needed without overheating to avoid rubbery eggs.
Notes
- Be generous with greasing muffin tins to prevent sticking.
- Vegetables are chopped but not pureed to retain texture.
- Muffins will puff up in the oven but will collapse once removed; this is normal.
- Freeze in individual portions for easy weekday breakfasts.
- Reheat carefully to avoid rubbery texture in eggs.

